basic local alignment search tool (blast) function of genbank Search Results


16s rrna gene blast analysis  (ATCC)
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ATCC 16s rrna gene blast analysis
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ncbi genbank blast similarity search program  (Biotechnology Information)
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Biotechnology Information ncbi genbank blast similarity search program
Ncbi Genbank Blast Similarity Search Program, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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genbank database  (Biotechnology Information)
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Biotechnology Information genbank database
Phylogenetic tree of the msp4 partial gene (786 bp) of Anaplasma marginale haplotypes constructed in Bayesian inference (BI) analysis with MrBayes version 3.2 . The SYM + I model was chosen as the best-fitting nucleotide substitution model by JModelTest version 2.1.10 software [ , ]. The analysis was run for 2,000,000 generations, with 1,000,000 generations discarded as burn-in. Nodal support is indicated as Bayesian posterior probabilities. Sequences from A. centrale ( CP001759 ) and A. ovis ( KU497708 , KU497712 ) were used as outgroups. <t>GenBank</t> accession numbers, hosts, and countries of origin are shown. The sequences from this study are in bold. Am = A. marginale , Ao = A. ovis , Ac = A. centrale
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se compararon las secuencias de adn obtenidas con accesiones reportadas en el genbank por medio de la herramienta blast  (Biotechnology Information)
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Biotechnology Information se compararon las secuencias de adn obtenidas con accesiones reportadas en el genbank por medio de la herramienta blast
Phylogenetic tree of the msp4 partial gene (786 bp) of Anaplasma marginale haplotypes constructed in Bayesian inference (BI) analysis with MrBayes version 3.2 . The SYM + I model was chosen as the best-fitting nucleotide substitution model by JModelTest version 2.1.10 software [ , ]. The analysis was run for 2,000,000 generations, with 1,000,000 generations discarded as burn-in. Nodal support is indicated as Bayesian posterior probabilities. Sequences from A. centrale ( CP001759 ) and A. ovis ( KU497708 , KU497712 ) were used as outgroups. <t>GenBank</t> accession numbers, hosts, and countries of origin are shown. The sequences from this study are in bold. Am = A. marginale , Ao = A. ovis , Ac = A. centrale
Se Compararon Las Secuencias De Adn Obtenidas Con Accesiones Reportadas En El Genbank Por Medio De La Herramienta Blast, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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se compararon las secuencias de adn obtenidas con accesiones reportadas en el genbank por medio de la herramienta blast - by Bioz Stars, 2026-07
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ncbi 2025a core nucleotide blast database  (Biotechnology Information)
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Biotechnology Information ncbi 2025a core nucleotide blast database
Phylogenetic tree of the msp4 partial gene (786 bp) of Anaplasma marginale haplotypes constructed in Bayesian inference (BI) analysis with MrBayes version 3.2 . The SYM + I model was chosen as the best-fitting nucleotide substitution model by JModelTest version 2.1.10 software [ , ]. The analysis was run for 2,000,000 generations, with 1,000,000 generations discarded as burn-in. Nodal support is indicated as Bayesian posterior probabilities. Sequences from A. centrale ( CP001759 ) and A. ovis ( KU497708 , KU497712 ) were used as outgroups. <t>GenBank</t> accession numbers, hosts, and countries of origin are shown. The sequences from this study are in bold. Am = A. marginale , Ao = A. ovis , Ac = A. centrale
Ncbi 2025a Core Nucleotide Blast Database, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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ribosomal rna sequence database  (Biotechnology Information)
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Biotechnology Information ribosomal rna sequence database
Phylogenetic tree of the msp4 partial gene (786 bp) of Anaplasma marginale haplotypes constructed in Bayesian inference (BI) analysis with MrBayes version 3.2 . The SYM + I model was chosen as the best-fitting nucleotide substitution model by JModelTest version 2.1.10 software [ , ]. The analysis was run for 2,000,000 generations, with 1,000,000 generations discarded as burn-in. Nodal support is indicated as Bayesian posterior probabilities. Sequences from A. centrale ( CP001759 ) and A. ovis ( KU497708 , KU497712 ) were used as outgroups. <t>GenBank</t> accession numbers, hosts, and countries of origin are shown. The sequences from this study are in bold. Am = A. marginale , Ao = A. ovis , Ac = A. centrale
Ribosomal Rna Sequence Database, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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blast tool on genbank  (Biotechnology Information)
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Biotechnology Information blast tool on genbank
Phylogenetic tree of the msp4 partial gene (786 bp) of Anaplasma marginale haplotypes constructed in Bayesian inference (BI) analysis with MrBayes version 3.2 . The SYM + I model was chosen as the best-fitting nucleotide substitution model by JModelTest version 2.1.10 software [ , ]. The analysis was run for 2,000,000 generations, with 1,000,000 generations discarded as burn-in. Nodal support is indicated as Bayesian posterior probabilities. Sequences from A. centrale ( CP001759 ) and A. ovis ( KU497708 , KU497712 ) were used as outgroups. <t>GenBank</t> accession numbers, hosts, and countries of origin are shown. The sequences from this study are in bold. Am = A. marginale , Ao = A. ovis , Ac = A. centrale
Blast Tool On Genbank, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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biotechnology information ncbi genbank  (Biotechnology Information)
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Biotechnology Information biotechnology information ncbi genbank
Phylogenetic tree of the msp4 partial gene (786 bp) of Anaplasma marginale haplotypes constructed in Bayesian inference (BI) analysis with MrBayes version 3.2 . The SYM + I model was chosen as the best-fitting nucleotide substitution model by JModelTest version 2.1.10 software [ , ]. The analysis was run for 2,000,000 generations, with 1,000,000 generations discarded as burn-in. Nodal support is indicated as Bayesian posterior probabilities. Sequences from A. centrale ( CP001759 ) and A. ovis ( KU497708 , KU497712 ) were used as outgroups. <t>GenBank</t> accession numbers, hosts, and countries of origin are shown. The sequences from this study are in bold. Am = A. marginale , Ao = A. ovis , Ac = A. centrale
Biotechnology Information Ncbi Genbank, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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ferritin, heavy polypeptide 1 (fth1)-gallus  (Gallus BioPharmaceuticals)
90
Gallus BioPharmaceuticals ferritin, heavy polypeptide 1 (fth1)-gallus
Phylogenetic tree of the msp4 partial gene (786 bp) of Anaplasma marginale haplotypes constructed in Bayesian inference (BI) analysis with MrBayes version 3.2 . The SYM + I model was chosen as the best-fitting nucleotide substitution model by JModelTest version 2.1.10 software [ , ]. The analysis was run for 2,000,000 generations, with 1,000,000 generations discarded as burn-in. Nodal support is indicated as Bayesian posterior probabilities. Sequences from A. centrale ( CP001759 ) and A. ovis ( KU497708 , KU497712 ) were used as outgroups. <t>GenBank</t> accession numbers, hosts, and countries of origin are shown. The sequences from this study are in bold. Am = A. marginale , Ao = A. ovis , Ac = A. centrale
Ferritin, Heavy Polypeptide 1 (Fth1) Gallus, supplied by Gallus BioPharmaceuticals, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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ncbi genbank database via blastp  (Biotechnology Information)
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Biotechnology Information ncbi genbank database via blastp
Amino acid (aa) sequence alignments ( A ) and neighbor-joining phylogeny of PcNPFR ( B ) against orthologs from other species. Identical residues among receptors were shaded in black, while 80% and 60% conserved substitutions in pink and cyan, respectively. Horizontal bars denoted TM helix 1–7. Typical rhodopsin-like GPCR motifs were marked by red boxes. In the phylogenetic tree, dots at branch nodes represented bootstrap values (50%). A scale bar indicated that the average number of aa substitutions per site was 0.2. The D. melanogaster neuropeptide F receptor was chosen as the outgroup. The aligned NPFR/NPYR homologs were retrieved from the <t>NCBI</t> database under the following accession numbers: XP_025096430.1 [ Pomacea canaliculata ], XP_005089880.1 [ Aplysia californica ], XP_055874125.1 [ Biomphalaria glabrata ], XP_046372073.2 [ Haliotis rufescens ], XP_041369772.1 [ Gigantopelta aegis ], XP_050395368.1 [ Patella vulgata ], GFO06936.1 [ Plakobranchus ocellatus ], GFR99678.1 [ Elysia marginata ], XP_022289835.1 [ Crassostrea virginica ], XP_048746931.2 [ Ostrea edulis ], XP_052224883.1 [ Dreissena polymorpha ], XP_006509657.1 [ Mus musculus ], NP_524245.3 [ Drosophila melanogaster ], XP_054206094.1 [ Homo sapiens ].
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genbank blast program  (Biotechnology Information)
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Biotechnology Information genbank blast program
Amino acid (aa) sequence alignments ( A ) and neighbor-joining phylogeny of PcNPFR ( B ) against orthologs from other species. Identical residues among receptors were shaded in black, while 80% and 60% conserved substitutions in pink and cyan, respectively. Horizontal bars denoted TM helix 1–7. Typical rhodopsin-like GPCR motifs were marked by red boxes. In the phylogenetic tree, dots at branch nodes represented bootstrap values (50%). A scale bar indicated that the average number of aa substitutions per site was 0.2. The D. melanogaster neuropeptide F receptor was chosen as the outgroup. The aligned NPFR/NPYR homologs were retrieved from the <t>NCBI</t> database under the following accession numbers: XP_025096430.1 [ Pomacea canaliculata ], XP_005089880.1 [ Aplysia californica ], XP_055874125.1 [ Biomphalaria glabrata ], XP_046372073.2 [ Haliotis rufescens ], XP_041369772.1 [ Gigantopelta aegis ], XP_050395368.1 [ Patella vulgata ], GFO06936.1 [ Plakobranchus ocellatus ], GFR99678.1 [ Elysia marginata ], XP_022289835.1 [ Crassostrea virginica ], XP_048746931.2 [ Ostrea edulis ], XP_052224883.1 [ Dreissena polymorpha ], XP_006509657.1 [ Mus musculus ], NP_524245.3 [ Drosophila melanogaster ], XP_054206094.1 [ Homo sapiens ].
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genetyx software  (GENETYX CORPORATION)
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GENETYX CORPORATION genetyx software
Amino acid (aa) sequence alignments ( A ) and neighbor-joining phylogeny of PcNPFR ( B ) against orthologs from other species. Identical residues among receptors were shaded in black, while 80% and 60% conserved substitutions in pink and cyan, respectively. Horizontal bars denoted TM helix 1–7. Typical rhodopsin-like GPCR motifs were marked by red boxes. In the phylogenetic tree, dots at branch nodes represented bootstrap values (50%). A scale bar indicated that the average number of aa substitutions per site was 0.2. The D. melanogaster neuropeptide F receptor was chosen as the outgroup. The aligned NPFR/NPYR homologs were retrieved from the <t>NCBI</t> database under the following accession numbers: XP_025096430.1 [ Pomacea canaliculata ], XP_005089880.1 [ Aplysia californica ], XP_055874125.1 [ Biomphalaria glabrata ], XP_046372073.2 [ Haliotis rufescens ], XP_041369772.1 [ Gigantopelta aegis ], XP_050395368.1 [ Patella vulgata ], GFO06936.1 [ Plakobranchus ocellatus ], GFR99678.1 [ Elysia marginata ], XP_022289835.1 [ Crassostrea virginica ], XP_048746931.2 [ Ostrea edulis ], XP_052224883.1 [ Dreissena polymorpha ], XP_006509657.1 [ Mus musculus ], NP_524245.3 [ Drosophila melanogaster ], XP_054206094.1 [ Homo sapiens ].
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Image Search Results


Phylogenetic tree of the msp4 partial gene (786 bp) of Anaplasma marginale haplotypes constructed in Bayesian inference (BI) analysis with MrBayes version 3.2 . The SYM + I model was chosen as the best-fitting nucleotide substitution model by JModelTest version 2.1.10 software [ , ]. The analysis was run for 2,000,000 generations, with 1,000,000 generations discarded as burn-in. Nodal support is indicated as Bayesian posterior probabilities. Sequences from A. centrale ( CP001759 ) and A. ovis ( KU497708 , KU497712 ) were used as outgroups. GenBank accession numbers, hosts, and countries of origin are shown. The sequences from this study are in bold. Am = A. marginale , Ao = A. ovis , Ac = A. centrale

Journal: Parasites & Vectors

Article Title: First report of Anaplasma marginale in the European bison Bison bonasus

doi: 10.1186/s13071-025-07056-8

Figure Lengend Snippet: Phylogenetic tree of the msp4 partial gene (786 bp) of Anaplasma marginale haplotypes constructed in Bayesian inference (BI) analysis with MrBayes version 3.2 . The SYM + I model was chosen as the best-fitting nucleotide substitution model by JModelTest version 2.1.10 software [ , ]. The analysis was run for 2,000,000 generations, with 1,000,000 generations discarded as burn-in. Nodal support is indicated as Bayesian posterior probabilities. Sequences from A. centrale ( CP001759 ) and A. ovis ( KU497708 , KU497712 ) were used as outgroups. GenBank accession numbers, hosts, and countries of origin are shown. The sequences from this study are in bold. Am = A. marginale , Ao = A. ovis , Ac = A. centrale

Article Snippet: The obtained sequences were compared with the GenBank database (Basic Local Alignment Search Tool [BLAST], National Center for Biotechnology Information [NCBI], USA) and then submitted to GenBank.

Techniques: Construct, Software

Amino acid (aa) sequence alignments ( A ) and neighbor-joining phylogeny of PcNPFR ( B ) against orthologs from other species. Identical residues among receptors were shaded in black, while 80% and 60% conserved substitutions in pink and cyan, respectively. Horizontal bars denoted TM helix 1–7. Typical rhodopsin-like GPCR motifs were marked by red boxes. In the phylogenetic tree, dots at branch nodes represented bootstrap values (50%). A scale bar indicated that the average number of aa substitutions per site was 0.2. The D. melanogaster neuropeptide F receptor was chosen as the outgroup. The aligned NPFR/NPYR homologs were retrieved from the NCBI database under the following accession numbers: XP_025096430.1 [ Pomacea canaliculata ], XP_005089880.1 [ Aplysia californica ], XP_055874125.1 [ Biomphalaria glabrata ], XP_046372073.2 [ Haliotis rufescens ], XP_041369772.1 [ Gigantopelta aegis ], XP_050395368.1 [ Patella vulgata ], GFO06936.1 [ Plakobranchus ocellatus ], GFR99678.1 [ Elysia marginata ], XP_022289835.1 [ Crassostrea virginica ], XP_048746931.2 [ Ostrea edulis ], XP_052224883.1 [ Dreissena polymorpha ], XP_006509657.1 [ Mus musculus ], NP_524245.3 [ Drosophila melanogaster ], XP_054206094.1 [ Homo sapiens ].

Journal: Biology

Article Title: Molecular and Functional Characterization of Neuropeptide F Receptor in Pomacea canaliculata : Roles in Feeding and Digestion and Communication with the Insulin Pathway

doi: 10.3390/biology14091241

Figure Lengend Snippet: Amino acid (aa) sequence alignments ( A ) and neighbor-joining phylogeny of PcNPFR ( B ) against orthologs from other species. Identical residues among receptors were shaded in black, while 80% and 60% conserved substitutions in pink and cyan, respectively. Horizontal bars denoted TM helix 1–7. Typical rhodopsin-like GPCR motifs were marked by red boxes. In the phylogenetic tree, dots at branch nodes represented bootstrap values (50%). A scale bar indicated that the average number of aa substitutions per site was 0.2. The D. melanogaster neuropeptide F receptor was chosen as the outgroup. The aligned NPFR/NPYR homologs were retrieved from the NCBI database under the following accession numbers: XP_025096430.1 [ Pomacea canaliculata ], XP_005089880.1 [ Aplysia californica ], XP_055874125.1 [ Biomphalaria glabrata ], XP_046372073.2 [ Haliotis rufescens ], XP_041369772.1 [ Gigantopelta aegis ], XP_050395368.1 [ Patella vulgata ], GFO06936.1 [ Plakobranchus ocellatus ], GFR99678.1 [ Elysia marginata ], XP_022289835.1 [ Crassostrea virginica ], XP_048746931.2 [ Ostrea edulis ], XP_052224883.1 [ Dreissena polymorpha ], XP_006509657.1 [ Mus musculus ], NP_524245.3 [ Drosophila melanogaster ], XP_054206094.1 [ Homo sapiens ].

Article Snippet: The amino acid (aa) sequence of PcNPFR (GenBank accession number, XP_025096430.1 ) were selected as the query to map the National Center for Biotechnology Information (NCBI) GenBank database via BlastP ( https://blast.ncbi.nlm.nih.gov/Blast.cgi?PROGRAM=blastp&PAGE_TYPE=BlastSearch&LINK_LOC=blasthome accessed on 14 July 2025) and retrieve available NPFR orthologs from other species.

Techniques: Sequencing